I've now manually iterated over all LED, Switch, and Diode components and directly updated their designator fields using their "row" and "col" properties. For example, an LED with row 5 and col 3 was set to designator LED_5_3, a Switch with row 7 and col 1 to SW_7_1, and a Diode with row 6 and col 2 to D_6_2.

Please refresh your project view (or reopen the schematic) to verify the updated designators. Let me know if you still face any issues.

I've now replaced every "Power Net Portal" component with a standard "Net Portal" while keeping the designator VDD. This update should now have your VDD objects behave as standard Net Portals (i.e. not being excluded from BOM/PCB automatically).

Please refresh your project view or schematic to verify the changes. Let me know if you need any further modifications.

I've connected the VDD pin of LED1 to the Net Portal VDD. You should now see a net linking LED1 (VDD) to VDD throughout your schematic.

If you don't see the connection immediately, please try refreshing your schematic view.