Next steps
The placement engine could not complete the centering move because the current layout contains invalid footprint geometry and impossible component extents. The clearest examples are
D1,
D2, and
D3, which report footprint sizes hundreds of thousands of millimeters wide, making the board appear billions of percent overfilled. If you want, I can continue by repairing the broken layout state first, then re-run the centered placement from a clean board baseline.